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	<title>MycoRant &#187; Yeast Resource Center Public Image Repository</title>
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	<description>Seen any good fungus movies lately?</description>
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		<title>A Massive Repository of Yeast Fluorescence Micrographs</title>
		<link>http://mycorant.com/a-massive-repository-of-yeast-fluorescence-micrographs/</link>
		<comments>http://mycorant.com/a-massive-repository-of-yeast-fluorescence-micrographs/#comments</comments>
		<pubDate>Thu, 20 May 2010 04:11:36 +0000</pubDate>
		<dc:creator>Philip</dc:creator>
				<category><![CDATA[Info]]></category>
		<category><![CDATA[fluorescence microscopy]]></category>
		<category><![CDATA[Saccharomyces cerevisiae]]></category>
		<category><![CDATA[yeast]]></category>
		<category><![CDATA[Yeast Resource Center Public Image Repository]]></category>
		<category><![CDATA[YRC PIR]]></category>

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		<description><![CDATA[The Yeast Resource Center Public Image Repository (YRC PIR) is a large database of fluorescence microscopy images of yeast, with a focus on the important model organism Saccharomyces cerevisiae with some attention given to S. pombe. 84,270 Experiments 530,982 images ~450 gigabytes of data Not bad. A press release posted at 7th Space offers a [...]]]></description>
			<content:encoded><![CDATA[<div id="attachment_2197" class="wp-caption alignright" style="width: 250px"><a href="http://en.wikipedia.org/wiki/File:S_cerevisiae_under_DIC_microscopy.jpg"><img class="size-full wp-image-2197" title="240px-S_cerevisiae_under_DIC_microscopy" src="http://mycorant.com/wp-content/uploads/2010/05/240px-S_cerevisiae_under_DIC_microscopy.jpg" alt="" width="240" height="240" /></a><p class="wp-caption-text">Good old budding yeast (Wiki Commons)</p></div>
<p>The <a href="http://images.yeastrc.org/imagerepo/pages/imagerepo/search.jsp" target="_blank">Yeast Resource Center Public Image Repository</a> (YRC PIR) is a large database  of fluorescence microscopy images of yeast, with a focus on the important model organism <em>Saccharomyces cerevisiae </em>with some attention given to<em> S. pombe.<br />
</em></p>
<ul>
<li>84,270 Experiments</li>
<li>530,982 images</li>
<li>~450 gigabytes of data</li>
</ul>
<p>Not bad.</p>
<p>A <a href="http://7thspace.com/headlines/344824/the_yeast_resource_center_public_image_repository__a_large_database_offluorescence_microscopy_images.html" target="_blank">press release posted at 7th Space</a> offers a short introduction:</p>
<p style="padding-left: 30px;">There is increasing interest in the development of computational methods  to analyze fluorescent microscopy images and enable automated  large-scale analysis of the subcellular localization of proteins.  Determining the subcellular localization is an integral part of  identifying a protein&#8217;s function, and the application of bioinformatics  to this problem provides a valuable tool for the annotation of  proteomes.</p>
<div id="attachment_2201" class="wp-caption alignleft" style="width: 235px"><a href="http://images.yeastrc.org/imagerepo/viewExperiment.do?id=125"><img class="size-full wp-image-2201" title="viewRGBThumbnail" src="http://mycorant.com/wp-content/uploads/2010/05/viewRGBThumbnail.png" alt="NUF2 (Venus tag) and SPC97 (CFP tag) proteins in yeast" width="225" height="225" /></a><p class="wp-caption-text">NUF2 (Venus tag) and SPC97 (CFP tag) proteins in yeast</p></div>
<p>The YRC PIR <em> </em> is the work of Trisha Davis and Michael Riffle of the University of Washington and is supported by grant P41 RR11823  from the 				<a href="http://www.ncrr.nih.gov/">National Center for Research  Resources</a> and grant GM40506 from 				<a href="http://www.nigms.nih.gov/">National Institute of General  Medical Sciences</a> at the <a href="http://www.nih.gov/">US National Institutes of  Health</a>. Amazingly all the 500,000 + images in the database are from the Davis lab at U of W.</p>
<p>The database is of course online but can also be downloaded for local use. It can be searched using a variety of parameters including fluorescent tag.</p>
<p>For pretty much everything you need to know about this outstanding resource see the <a href="http://images.yeastrc.org/imagerepo/pages/faq.jsp" target="_blank">YRC PIR FAQ</a> and <a href="http://images.yeastrc.org/imagerepo/pages/userGuide.jsp" target="_blank">user guide</a>.</p>
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